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gene expression omnibus public genomic data repository  (Biotechnology Information)

 
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    Biotechnology Information gene expression omnibus public genomic data repository
    Gene Expression Omnibus Public Genomic Data Repository, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+data/expression+gene+omnibus+%E2%80%A2/pm42297033-150-18-16
    Average 86 stars, based on 1 article reviews
    gene expression omnibus public genomic data repository - by Bioz Stars, 2026-11
    86/100 stars

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    Related Articles

    Gene Expression:

    Article Title: Modelling APOL1-mediated kidney inflammation and fibrosis using a partially reprogrammed urine-derived SIX2-positive renal progenitor cell line.
    Article Snippet: .. Gene expression data will be available online in the National Centre of Biotechnology Information (NCBI) Gene Expression Omnibus. .. Genomic DNA was isolated and 1 μg sent off for genotyping APOL1 kidney risk variants were genotyped with genomic DNA using TaqMan assay probes (ThermoFisher), G1 (rs0910145, p.I384M, Assay ID C_89555688_30 and rs73885319, p.S342G, Assay ID, C__98253221_10), G2 (rs71785313, p.N388_Y389del, C_102754756_10) and APOL1 modifier (rs73885316, p.N264K, Assay ID C__98253219_20).

    Article Title: Immune and Metabolic Pathways in Idiopathic Membranous Nephropathy: Insights from Bioinformatics and Animal Models
    Article Snippet: .. Methods 2.1 Data Acquisition Gene expression data for IMN patients were obtained from the Gene Expression Omnibus (GEO) database of the National Center for Biotechnology Information (NCBI). ..

    Article Title: Metabolic surgery mitigates early kidney injury in obese youth with diabetes by suppressing mTORC1/JAK/STAT signaling
    Article Snippet: .. Gene expression data can be accessed from National Center for Biotechnology Information Gene Expression Omnibus GSE315877 . ..

    Article Title: Machine learning identifies genes linked to neurological disorders induced by equine encephalitis viruses, traumatic brain injuries, and organophosphorus nerve agents
    Article Snippet: .. The publicly available gene expression data were obtained from the National Center for Biotechnology Information (NCBI), under the Gene Expression Omnibus (GEO) database. ..

    Article Title: Genome-wide identification, expression analysis, and stress response analysis of the RdbZIP gene family in Rhododendron delavayi
    Article Snippet: .. The dataset analyzed during the current study, including the gene expression data from various tissues mentioned in the manuscript, is available in the National Center for Biotechnology Information (NCBI) repository, with the dataset accession number PRJNA907866 ( https://www.ncbi.nlm.nih.gov/ ). ..

    Article Title: Substrate stiffness regulates triple-negative breast cancer signaling through CXCR4 receptor dynamics
    Article Snippet: .. For gene expression of cells cultured on stiff versus soft environments, we downloaded gene expression data from three different breast cancer studies , from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) website. ..

    Article Title: A machine learning integrated multi-omics framework for risk prediction and target discovery in insomnia aggravated sepsis induced acute lung injury
    Article Snippet: .. Gene expression data were obtained from the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO) database ( http://www.ncbi.nlm.nih.gov/geo/ ). ..

    Article Title: Transcriptome-based high-frequency recurrence index predicts frequent recurrence in non-muscle-invasive bladder cancer after Bacillus Calmette-Guérin therapy.
    Article Snippet: .. Gene expression data for the bladder cancer microarray study were downloaded from the Gene Expression Omnibus (GEO, RRID:SCR_005012) database from the National Center for Biotechnology Information (NCBI) under accession numbers GSE5479 [12, 20], GSE13507 [13, 14, 21], GSE120736 [11, 22], and GSE163209 [8, 23]. ..

    Cell Culture:

    Article Title: Substrate stiffness regulates triple-negative breast cancer signaling through CXCR4 receptor dynamics
    Article Snippet: .. For gene expression of cells cultured on stiff versus soft environments, we downloaded gene expression data from three different breast cancer studies , from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) website. ..

    Microarray:

    Article Title: Transcriptome-based high-frequency recurrence index predicts frequent recurrence in non-muscle-invasive bladder cancer after Bacillus Calmette-Guérin therapy.
    Article Snippet: .. Gene expression data for the bladder cancer microarray study were downloaded from the Gene Expression Omnibus (GEO, RRID:SCR_005012) database from the National Center for Biotechnology Information (NCBI) under accession numbers GSE5479 [12, 20], GSE13507 [13, 14, 21], GSE120736 [11, 22], and GSE163209 [8, 23]. ..



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    (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate <t>Specific</t> Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain <t>genes</t> and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed <t>tissue</t> in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.
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    Image Search Results


    Journal: Cell Genomics

    Article Title: MultiSP deciphers tissue structure and multicellular communication from spatial multi-omics data

    doi: 10.1016/j.xgen.2026.101141

    Figure Lengend Snippet:

    Article Snippet: 10× Visium human tonsil gene and protein expression data , 10× Genomics , https://www.10xgenomics.com/resources/datasets/gene-protein-expression-library-of-human-tonsil-cytassist-ffpe-2-standard.

    Techniques: Expressing, Software

    (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate Specific Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain genes and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed tissue in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.

    Journal: PLOS One

    Article Title: Comparative genomics of human brain and immune gene preservation across species

    doi: 10.1371/journal.pone.0348713

    Figure Lengend Snippet: (A) Cohen’s h values for pairwise comparisons between 𝒞 and the other two groups: ℬ and ℐ . Primate Specific Ratios are calculated as in . A higher absolute Cohen’s h indicates a greater difference in ratios between the two compared groups. Green bar represents ℬ , orange bar represents ℐ , and blue bars represent 𝒞 . (B) Results of Fisher’s exact tests for pairwise comparisons between each of ℬ , ℐ , and 𝒞 and each control group ( ℱ and ℛ ), together with the comparison between ℱ and ℛ . Primate Specific Ratios are calculated as in . Statistical significance is denoted by asterisks. Results with p-values less than 0.01 are indicated by two asterisks (**), results with p-values less than 0.05 are indicated by one asterisk (*), and all other results are marked as ns . Green bar represents ℬ , orange bar represents ℐ , blue bar represents 𝒞 , gray bars represent ℛ , and purple bars represent ℱ . (C) The number of tissues corresponding to each quantile for the brain genes and immune-related genes. Green bars represent ℬ , orange bars represent ℐ , and gray bars represent all genes that have at least one highly expressed tissue in Human Protein Atlas [ , ]. (D) The number and ratio of genes highly expressed specifically in brain tissues or immune-related tissues, out of 1019 brain genes and 586 immune-related genes, respectively.

    Article Snippet: There are six types of data used in this work: (1) CDS (coding sequence) data of 32 primate species and 4 non-primate species [ , ]; (2) tissue specific gene expression data obtained from the Human Protein Atlas 23.0 [ , ]; (3) 1360 human genes highly expressed in the brain or the immune system [ , ]; (4) 295 random human genes selected using the random.sample() function in Python 3.10.8; (5) 369 human genes each from a distinct HGNC [ ] gene family group; and (6) protein sequences of the genes obtained from UniProt [ ].

    Techniques: Control, Comparison